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I am sure you can ask your doctor to assist you on where you can get a DNA test done.
Otherwise, I'd recommend using an established group of hospitals such as Mediclinic to get the job done.
From what I can see on the internet, there are a number of different types of DNA test which are used for different purposes and vary in accuracy. Prices do vary quite considerably - but on average you should expect to pay around R1700.
Use our Healthcare in Cape Town page for more general information on hospitals in the city.
Best of luck
Shantalie